Variant report

Variant	rs13090951
Chromosome Location	chr3:28401883-28401884
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10510610	0.86[EUR][1000 genomes]
rs11716132	0.82[EUR][1000 genomes]
rs12106746	0.92[EUR][1000 genomes]
rs12107561	0.93[EUR][1000 genomes]
rs12374021	0.92[EUR][1000 genomes]
rs12485652	0.86[EUR][1000 genomes]
rs12491905	0.83[EUR][1000 genomes]
rs12493720	0.83[EUR][1000 genomes]
rs12493797	0.82[EUR][1000 genomes]
rs13068978	0.93[EUR][1000 genomes]
rs13089663	0.84[EUR][1000 genomes]
rs13095609	0.91[EUR][1000 genomes]
rs13099977	0.86[EUR][1000 genomes]
rs1599951	0.85[EUR][1000 genomes]
rs17639954	0.83[EUR][1000 genomes]
rs1870258	0.92[EUR][1000 genomes]
rs2125205	0.93[EUR][1000 genomes]
rs34335277	0.92[EUR][1000 genomes]
rs34463163	0.86[EUR][1000 genomes]
rs34539152	0.83[EUR][1000 genomes]
rs34637008	0.93[EUR][1000 genomes]
rs34914936	0.86[EUR][1000 genomes]
rs35194037	0.93[EUR][1000 genomes]
rs35374336	0.91[EUR][1000 genomes]
rs36106945	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4393865	0.91[EUR][1000 genomes]
rs4552313	0.87[EUR][1000 genomes]
rs4680912	0.86[EUR][1000 genomes]
rs56058287	0.85[EUR][1000 genomes]
rs62251110	0.91[EUR][1000 genomes]
rs62251112	0.92[EUR][1000 genomes]
rs62251132	0.93[EUR][1000 genomes]
rs6551254	0.86[EUR][1000 genomes]
rs6799435	0.83[EUR][1000 genomes]
rs6805638	0.86[EUR][1000 genomes]
rs9968098	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28393800-28412200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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