Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11923106	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12485456	0.95[CEU][hapmap]
rs1350150	0.95[CEU][hapmap]
rs1378797	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1456093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1456094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1456095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs1456112	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1456113	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1550651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1988267	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs2034094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2840046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4679800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7626974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7629184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs920759	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs973207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9809137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs988758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157185600-157211400	Weak transcription	HSMM	muscle
2	chr3:157187600-157210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:157188000-157203000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:157189400-157199400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157194000-157212000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157194400-157210200	Weak transcription	NH-A	brain
7	chr3:157194600-157217000	Weak transcription	Pancreas	Pancrea
8	chr3:157194800-157212000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157198800-157200000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:157198800-157204400	Weak transcription	HUVEC	blood vessel
11	chr3:157198800-157210400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:157199000-157200400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:157199000-157200600	Weak transcription	Osteobl	bone
14	chr3:157199000-157211600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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