Variant report

Variant	rs1550651
Chromosome Location	chr3:157188466-157188467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:157188238-157188643	T-47D	breast:	n/a	n/a
2	GATA3	chr3:157188389-157188573	SH-SY5Y	brain:	n/a	n/a
3	GATA2	chr3:157188268-157188590	HUVEC	blood vessel:	n/a	n/a
4	GATA3	chr3:157188173-157188667	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
VEPH1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11718199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11923106	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12485456	0.95[CEU][hapmap];0.87[YRI][hapmap]
rs1350150	0.95[CEU][hapmap];0.82[YRI][hapmap]
rs1378797	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs1456093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1456094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1456095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1456112	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs1456113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1988267	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2034094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2840046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4679800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7626974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7629184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs920759	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs973207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9809137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs988758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:157182800-157190400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:157184400-157190400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:157185600-157189600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:157185600-157211400	Weak transcription	HSMM	muscle
6	chr3:157186000-157193400	Weak transcription	NHLF	lung
7	chr3:157187000-157189400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157187200-157189800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:157187400-157193600	Weak transcription	NH-A	brain
10	chr3:157187600-157210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:157187800-157193400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:157188000-157188800	Genic enhancers	HUVEC	blood vessel
13	chr3:157188000-157203000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:157188200-157193600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:157188200-157193600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:157188200-157193800	Weak transcription	Osteobl	bone
17	chr3:157188400-157188600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:157188400-157189000	Enhancers	Fetal Stomach	stomach

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