Variant report

Variant	rs4679800
Chromosome Location	chr3:157215110-157215111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:157215044-157215487	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
VEPH1	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11718199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11923106	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12485456	0.82[ASW][hapmap];0.95[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13318762	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1350150	0.95[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378797	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1378802	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1456093	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1456094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1456095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1456112	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1456113	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1550651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840667	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988267	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2034094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2316349	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2840046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680373	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7626974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7629184	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs920759	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs973207	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9809137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157194600-157217000	Weak transcription	Pancreas	Pancrea
2	chr3:157210600-157217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:157211000-157216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:157212000-157216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:157212200-157216200	Weak transcription	NHDF-Ad	bronchial
6	chr3:157212200-157217200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157212400-157216200	Weak transcription	Fetal Kidney	kidney
8	chr3:157212400-157216200	Weak transcription	Fetal Lung	lung
9	chr3:157212600-157216400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:157212600-157216800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:157212600-157217000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:157212800-157217000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:157212800-157217000	Weak transcription	NHLF	lung
14	chr3:157213000-157216000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157213200-157216800	Weak transcription	HSMM	muscle
16	chr3:157213200-157217000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:157213200-157217000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:157213200-157217000	Weak transcription	NH-A	brain
19	chr3:157213200-157217200	Weak transcription	HSMMtube	muscle
20	chr3:157213200-157221200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:157213400-157217000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:157213800-157216200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:157213800-157217200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:157214000-157215200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:157214000-157215400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:157214000-157216800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:157214000-157216800	Weak transcription	Adipose Nuclei	Adipose
28	chr3:157214000-157217200	Weak transcription	HUVEC	blood vessel
29	chr3:157214200-157216200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:157214200-157217000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:157214400-157216200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:157214800-157215400	Enhancers	Osteobl	bone
33	chr3:157214800-157216200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:157214800-157216200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:157214800-157216600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:157215000-157215200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr3:157215000-157215200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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