Variant report

Variant	rs11923106
Chromosome Location	chr3:157178395-157178396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157175083..157179044-chr3:157180593..157185169,5	K562	blood:
2	chr3:157176898..157178471-chr3:157180465..157182221,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11718199	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12485456	0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13318762	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1350150	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1378797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378802	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1456093	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1456094	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1456095	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1456112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1456113	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1550651	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1840667	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1988267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2034094	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2316349	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2840046	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4679800	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680373	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7626974	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7629184	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs920759	0.96[CEU][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs973207	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9809137	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs988758	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:157164600-157185400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:157170200-157187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157175400-157181200	Weak transcription	Lung	lung
6	chr3:157176800-157178800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:157177200-157178400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157177200-157178400	Genic enhancers	HUVEC	blood vessel
9	chr3:157177400-157178600	Flanking Active TSS	NHLF	lung
10	chr3:157177400-157179600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:157177600-157178600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr3:157177600-157178800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:157177600-157178800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:157177600-157179000	Genic enhancers	Osteobl	bone
15	chr3:157177800-157178800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:157178000-157178400	Enhancers	HSMM	muscle
17	chr3:157178000-157178400	Enhancers	NH-A	brain
18	chr3:157178000-157178400	Enhancers	NHDF-Ad	bronchial
19	chr3:157178000-157178600	Enhancers	NHEK	skin
20	chr3:157178000-157178800	Enhancers	HSMMtube	muscle
21	chr3:157178000-157179400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:157178200-157178600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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