Variant report

Variant	rs11732348
Chromosome Location	chr4:130038985-130038986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11725174	0.80[AMR][1000 genomes]
rs11733095	0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs11736968	0.80[AMR][1000 genomes]
rs11737003	0.80[AMR][1000 genomes]
rs12501507	0.80[AMR][1000 genomes]
rs12508824	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114398	0.85[CHB][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs13136220	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13137378	1.00[CHD][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs13142673	0.80[AMR][1000 genomes]
rs13151322	0.81[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs17185515	0.80[AMR][1000 genomes]
rs17789626	0.80[AMR][1000 genomes]
rs1867951	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2271570	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs4487352	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11732348	C4orf33	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130017600-130040400	Weak transcription	Lung	lung
2	chr4:130029200-130040000	Weak transcription	Esophagus	oesophagus
3	chr4:130029400-130041200	Weak transcription	Spleen	Spleen
4	chr4:130031800-130039800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:130031800-130040000	Weak transcription	Dnd41	blood
6	chr4:130032400-130040000	Weak transcription	Primary T cells from cord blood	blood
7	chr4:130032400-130052200	Weak transcription	Aorta	Aorta
8	chr4:130036000-130044600	Weak transcription	Pancreas	Pancrea
9	chr4:130038600-130039400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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