Variant report

Variant	rs11742263
Chromosome Location	chr5:107432663-107432664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17161091	0.96[EUR][1000 genomes]
rs55665551	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55818290	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58652615	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60569410	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6894602	1.00[EUR][1000 genomes]
rs6895600	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72789263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798153	1.00[EUR][1000 genomes]
rs72798160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7712712	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7729464	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:107420000-107433000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107421400-107437000	Weak transcription	Psoas Muscle	Psoas
6	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:107429400-107437400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:107430000-107435800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:107431200-107436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:107432600-107436600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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