Variant report

Variant	rs72798160
Chromosome Location	chr5:107436546-107436547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11742263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161091	0.96[EUR][1000 genomes]
rs55665551	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55818290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58652615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60569410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6894602	1.00[EUR][1000 genomes]
rs6895600	1.00[EUR][1000 genomes]
rs72789263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798153	1.00[EUR][1000 genomes]
rs7712712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7729464	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:107421400-107437000	Weak transcription	Psoas Muscle	Psoas
5	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:107429400-107437400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:107431200-107436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107432600-107436600	Weak transcription	Fetal Lung	lung
10	chr5:107435800-107436800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107436000-107437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107436400-107437000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:107436400-107437600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:107436400-107437800	Enhancers	Brain Anterior Caudate	brain
15	chr5:107436400-107437800	Enhancers	Brain Hippocampus Middle	brain
16	chr5:107436400-107437800	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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