Variant report

Variant	rs60569410
Chromosome Location	chr5:107461685-107461686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11742263	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161091	0.96[EUR][1000 genomes]
rs55665551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55818290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57518790	0.90[AFR][1000 genomes]
rs58652615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6894602	0.92[EUR][1000 genomes]
rs6895600	0.92[EUR][1000 genomes]
rs72789263	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798153	0.92[EUR][1000 genomes]
rs72798160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73778671	0.90[AFR][1000 genomes]
rs7712712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7729464	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518369	chr5:107459529-107469524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
3	chr5:107449000-107467200	Weak transcription	Aorta	Aorta
4	chr5:107460600-107461800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:107460800-107465000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107461400-107462200	Enhancers	HepG2	liver
7	chr5:107461600-107461800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107461600-107461800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:107461600-107462600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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