Variant report

Variant	rs6894602
Chromosome Location	chr5:107428246-107428247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11742263	1.00[EUR][1000 genomes]
rs17161091	0.96[EUR][1000 genomes]
rs55665551	0.96[EUR][1000 genomes]
rs55818290	0.96[EUR][1000 genomes]
rs58652615	0.96[EUR][1000 genomes]
rs60569410	0.92[EUR][1000 genomes]
rs6895600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789263	0.96[EUR][1000 genomes]
rs72798153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798160	1.00[EUR][1000 genomes]
rs7712712	1.00[EUR][1000 genomes]
rs7729464	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:107420000-107433000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107421400-107437000	Weak transcription	Psoas Muscle	Psoas
7	chr5:107426600-107429400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107426600-107429400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:107426800-107428400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:107426800-107428600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:107426800-107430800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:107427200-107432200	Weak transcription	Fetal Lung	lung
13	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:107427600-107429400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:107428200-107429200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:107428200-107429200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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