Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11758421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55668156	1.00[ASN][1000 genomes]
rs55727993	1.00[ASN][1000 genomes]
rs56407207	1.00[ASN][1000 genomes]
rs62424885	1.00[ASN][1000 genomes]
rs62424900	1.00[ASN][1000 genomes]
rs62424908	1.00[ASN][1000 genomes]
rs62424909	1.00[ASN][1000 genomes]
rs62426821	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62426826	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62426827	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62426828	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62426829	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62426830	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62426831	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62426833	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426836	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427798	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914850	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72897238	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11751263	TAF4B	trans	cerebellum	SCAN
rs11751263	ELOVL4	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79410400-79411200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:79410600-79411400	Enhancers	NH-A	brain
3	chr6:79410600-79411800	Enhancers	NHEK	skin
4	chr6:79410800-79411200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:79410800-79411200	Enhancers	HMEC	breast
6	chr6:79411000-79411400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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