Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11751263	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758421	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55668156	1.00[ASN][1000 genomes]
rs55727993	1.00[ASN][1000 genomes]
rs56407207	1.00[ASN][1000 genomes]
rs62424885	1.00[ASN][1000 genomes]
rs62424900	1.00[ASN][1000 genomes]
rs62424908	1.00[ASN][1000 genomes]
rs62424909	1.00[ASN][1000 genomes]
rs62426821	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426826	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426827	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426828	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426829	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62426830	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62426831	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62426833	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427772	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427798	1.00[ASN][1000 genomes]
rs6914850	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72897238	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167379400-167394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:167379800-167386800	Weak transcription	Right Ventricle	heart
3	chr5:167380000-167386800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167380600-167387600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167380600-167394800	Weak transcription	HSMM	muscle
6	chr5:167380800-167383400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167380800-167394200	Weak transcription	NHEK	skin
8	chr5:167381000-167393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167381800-167385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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