Variant report

Variant	rs62424909
Chromosome Location	chr6:79525762-79525763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11751263	1.00[ASN][1000 genomes]
rs11758421	1.00[ASN][1000 genomes]
rs55668156	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55727993	1.00[ASN][1000 genomes]
rs56407207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424885	1.00[ASN][1000 genomes]
rs62424900	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62424908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426833	1.00[ASN][1000 genomes]
rs62426836	1.00[ASN][1000 genomes]
rs62427772	1.00[ASN][1000 genomes]
rs62427798	1.00[ASN][1000 genomes]
rs72901194	1.00[ASN][1000 genomes]
rs72902881	1.00[ASN][1000 genomes]
rs72902885	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:78 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433815	chr6:79443282-79536957	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	esv1795323	chr6:79483130-79526269	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv1795891	chr6:79483130-79526269	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv1799614	chr6:79483130-79526269	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv1799452	chr6:79483130-79536282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv5366	chr6:79497125-79537571	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv508416	chr6:79510199-79538206	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv1794724	chr6:79519669-79526269	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv970720	chr6:79519769-79535695	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv604015	chr6:79519842-79525971	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv1799898	chr6:79519842-79526269	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv604016	chr6:79519842-79526269	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv3518854	chr6:79520233-79531031	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv3515549	chr6:79520383-79529881	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv3515550	chr6:79520383-79529881	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv3474127	chr6:79520731-79530971	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv2565425	chr6:79520768-79531660	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	esv2494469	chr6:79520898-79531809	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv2224222	chr6:79520905-79530797	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv3518852	chr6:79520907-79530855	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv3474131	chr6:79520940-79530810	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
22	esv3518856	chr6:79520972-79530794	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	nsv823757	chr6:79520975-79531657	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
24	esv3518855	chr6:79520979-79530786	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
25	esv3474128	chr6:79520995-79530762	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
26	nsv819795	chr6:79521005-79528507	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
27	nsv442992	chr6:79521062-79528574	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
28	esv1793214	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
29	esv1796079	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
30	esv1796251	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
31	esv1797473	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
32	esv1798442	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
33	esv1802073	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
34	esv1834280	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
35	esv1834879	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
36	esv1836965	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
37	esv1836986	chr6:79521067-79526269	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
38	esv1837190	chr6:79521067-79526269	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
39	esv1840719	chr6:79521067-79526269	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
40	esv1840956	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
41	esv1841555	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
42	esv3474130	chr6:79521070-79530690	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
43	esv3474132	chr6:79521084-79530690	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
44	esv3518857	chr6:79521084-79530690	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
45	esv17718	chr6:79521092-79530501	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
46	nsv821210	chr6:79521092-79531657	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
47	esv1817619	chr6:79521326-79540666	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
48	esv3474616	chr6:79521733-79530731	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
49	esv3474617	chr6:79521733-79530731	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
50	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79521800-79527000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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