Variant report

Variant	rs72901194
Chromosome Location	chr6:79605593-79605594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11754374	0.83[EUR][1000 genomes]
rs11760038	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35744497	1.00[ASN][1000 genomes]
rs55668156	1.00[ASN][1000 genomes]
rs55727993	1.00[ASN][1000 genomes]
rs56407207	1.00[ASN][1000 genomes]
rs62424885	1.00[ASN][1000 genomes]
rs62424900	1.00[ASN][1000 genomes]
rs62424908	1.00[ASN][1000 genomes]
rs62424909	1.00[ASN][1000 genomes]
rs62427798	1.00[ASN][1000 genomes]
rs72902881	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902885	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904858	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79578200-79608600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:79578200-79608600	Weak transcription	Left Ventricle	heart
3	chr6:79578200-79613600	Weak transcription	HSMM	muscle
4	chr6:79578400-79613800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
7	chr6:79578600-79612400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:79578600-79618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:79578800-79608600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:79578800-79613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:79582000-79608400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:79584800-79608600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:79585200-79619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:79585200-79620200	Weak transcription	Fetal Lung	lung
15	chr6:79587600-79607600	Weak transcription	Dnd41	blood
16	chr6:79587600-79611200	Weak transcription	Brain Anterior Caudate	brain
17	chr6:79587800-79608400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:79588000-79619800	Weak transcription	Fetal Brain Female	brain
19	chr6:79588200-79611800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:79588200-79611800	Weak transcription	Pancreas	Pancrea
21	chr6:79588200-79612000	Weak transcription	Fetal Stomach	stomach
22	chr6:79588200-79616400	Weak transcription	Primary T cells from cord blood	blood
23	chr6:79589600-79618200	Weak transcription	Aorta	Aorta
24	chr6:79589600-79619800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:79589800-79620200	Weak transcription	Fetal Brain Male	brain
26	chr6:79592600-79620200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:79596200-79608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:79596800-79618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:79597000-79620000	Weak transcription	Fetal Kidney	kidney
30	chr6:79597400-79619800	Weak transcription	Ovary	ovary
31	chr6:79598400-79608600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:79598800-79612000	Weak transcription	Fetal Intestine Small	intestine
33	chr6:79599400-79607600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:79599400-79612200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:79600200-79619600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:79603000-79607600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:79604600-79619200	Weak transcription	Fetal Heart	heart
38	chr6:79605000-79619200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:79605200-79619800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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