Variant report

Variant	rs72902885
Chromosome Location	chr6:79707740-79707741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79706595..79709353-chr6:79719320..79721938,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11754374	0.89[EUR][1000 genomes]
rs11760038	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35744497	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56407207	1.00[ASN][1000 genomes]
rs62424908	1.00[ASN][1000 genomes]
rs62424909	1.00[ASN][1000 genomes]
rs72901194	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902881	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904858	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648800-79714400	Weak transcription	Gastric	stomach
2	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
3	chr6:79687000-79709400	Strong transcription	Duodenum Mucosa	Duodenum
4	chr6:79687000-79714400	Strong transcription	Liver	Liver
5	chr6:79687000-79715800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:79687000-79715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:79687200-79709400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:79687200-79709400	Strong transcription	Fetal Intestine Large	intestine
11	chr6:79687200-79714400	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:79687200-79714600	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr6:79687200-79714600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr6:79687200-79714800	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr6:79687200-79715000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:79687200-79715400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr6:79687200-79715600	Strong transcription	Primary B cells from cord blood	blood
18	chr6:79687200-79715600	Strong transcription	Fetal Thymus	thymus
19	chr6:79687200-79716000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:79687200-79717600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:79687600-79718600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:79687600-79775000	Strong transcription	Dnd41	blood
25	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:79688000-79709400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:79688400-79708800	Strong transcription	GM12878-XiMat	blood
28	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:79688800-79709000	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:79697000-79714200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:79699600-79709400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:79699800-79712400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:79700000-79714600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:79700400-79715800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:79700800-79708200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:79700800-79709000	Strong transcription	Left Ventricle	heart
39	chr6:79701400-79709400	Strong transcription	Primary T cells from cord blood	blood
40	chr6:79701800-79709400	Strong transcription	NHDF-Ad	bronchial
41	chr6:79702000-79709000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:79702000-79709000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:79702000-79709200	Strong transcription	Rectal Smooth Muscle	rectum
44	chr6:79702000-79714400	Strong transcription	Fetal Lung	lung
45	chr6:79702000-79714400	Strong transcription	K562	blood
46	chr6:79702200-79707800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:79702200-79708200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:79702200-79708800	Strong transcription	Brain Angular Gyrus	brain
49	chr6:79702200-79709000	Strong transcription	Ovary	ovary
50	chr6:79702200-79709200	Strong transcription	Stomach Smooth Muscle	stomach

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