Variant report

Variant	rs11760038
Chromosome Location	chr6:79765944-79765945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79764144..79766429-chr6:79768254..79771136,3	K562	blood:
2	chr6:79757654..79762707-chr6:79762801..79766405,4	K562	blood:
3	chr6:79764915..79767501-chr6:79771426..79773646,2	MCF-7	breast:
4	chr6:79754347..79756749-chr6:79764900..79766889,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11754374	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35744497	1.00[ASN][1000 genomes]
rs72901194	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902881	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902885	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
5	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
7	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
11	chr6:79732200-79774600	Weak transcription	Gastric	stomach
12	chr6:79734000-79768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:79739000-79780000	Weak transcription	NHLF	lung
15	chr6:79739400-79769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
17	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:79743400-79769600	Weak transcription	NHEK	skin
19	chr6:79748200-79774000	Weak transcription	Fetal Heart	heart
20	chr6:79748200-79774400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:79751600-79774600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:79755000-79785400	Weak transcription	Colonic Mucosa	Colon
23	chr6:79755600-79771000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:79756600-79766200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:79756600-79775000	Weak transcription	Pancreas	Pancrea
26	chr6:79757400-79766000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:79757600-79767600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:79758400-79770800	Strong transcription	Fetal Thymus	thymus
29	chr6:79759200-79769000	Strong transcription	HSMM	muscle
30	chr6:79759200-79774600	Weak transcription	Fetal Stomach	stomach
31	chr6:79759400-79773000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:79759600-79771000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:79759600-79780200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:79760000-79771200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:79760200-79771200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:79760600-79770600	Strong transcription	Liver	Liver
37	chr6:79760600-79771800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:79760600-79785400	Weak transcription	Right Ventricle	heart
39	chr6:79760600-79786800	Weak transcription	Spleen	Spleen
40	chr6:79761000-79766200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:79761400-79771000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:79762200-79768200	Weak transcription	Brain Anterior Caudate	brain
43	chr6:79762200-79768200	Weak transcription	HUVEC	blood vessel
44	chr6:79762200-79774200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:79762600-79766800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:79762800-79766000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:79762800-79767800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:79763000-79766000	Weak transcription	Ovary	ovary
49	chr6:79763000-79766200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:79763000-79766200	Weak transcription	Thymus	Thymus

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