Variant report
| Variant | rs11758421 |
|---|---|
| Chromosome Location | chr6:79420558-79420559 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11751263 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55668156 | 1.00[ASN][1000 genomes] |
| rs55727993 | 1.00[ASN][1000 genomes] |
| rs56407207 | 1.00[ASN][1000 genomes] |
| rs62424885 | 1.00[ASN][1000 genomes] |
| rs62424900 | 1.00[ASN][1000 genomes] |
| rs62424908 | 1.00[ASN][1000 genomes] |
| rs62424909 | 1.00[ASN][1000 genomes] |
| rs62426821 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62426826 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62426827 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62426828 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62426829 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62426830 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62426831 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62426833 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62426836 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62427772 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62427798 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6914850 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72897238 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604011 | chr6:79042990-79455282 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11758421 | ELOVL4 | cis | parietal | SCAN |
| rs11758421 | TAF4B | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79419000-79422600 | Weak transcription | Dnd41 | blood |
