Variant report

Variant	rs11757235
Chromosome Location	chr6:28489279-28489280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28488832..28491133-chr6:28492091..28495083,2	K562	blood:

Variant related genes	Relation type
ENSG00000224586	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1029328	0.92[CEU][hapmap]
rs11753292	1.00[ASN][1000 genomes]
rs11754112	1.00[ASN][1000 genomes]
rs11754599	1.00[ASN][1000 genomes]
rs11755387	0.92[CEU][hapmap]
rs11758822	1.00[ASN][1000 genomes]
rs12110753	1.00[ASN][1000 genomes]
rs12111360	1.00[ASN][1000 genomes]
rs1319076	1.00[ASN][1000 genomes]
rs28382587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893967	1.00[ASN][1000 genomes]
rs34211304	1.00[ASN][1000 genomes]
rs34302671	0.85[EUR][1000 genomes]
rs34560199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34668037	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435933	1.00[ASN][1000 genomes]
rs56958518	1.00[ASN][1000 genomes]
rs73391123	1.00[ASN][1000 genomes]
rs73402976	1.00[ASN][1000 genomes]
rs73402978	1.00[ASN][1000 genomes]
rs73402982	1.00[ASN][1000 genomes]
rs73402983	1.00[ASN][1000 genomes]
rs73404965	0.82[ASN][1000 genomes]
rs73409121	1.00[ASN][1000 genomes]
rs73409125	1.00[ASN][1000 genomes]
rs73409140	1.00[ASN][1000 genomes]
rs7738979	0.89[ASN][1000 genomes]
rs7774808	1.00[ASN][1000 genomes]
rs9468346	1.00[JPT][hapmap]
rs9791301	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11757235	ZKSCAN3	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28483600-28490400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28489000-28489600	Bivalent Enhancer	Primary T cells from cord blood	blood

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