Variant report

Variant	rs73409121
Chromosome Location	chr6:28640521-28640522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28633014..28636494-chr6:28636598..28640910,4	K562	blood:
2	chr6:28640241..28643540-chr6:28644556..28647910,4	K562	blood:
3	chr6:28458124..28459784-chr6:28640264..28642062,2	K562	blood:
4	chr6:28623399..28625951-chr6:28639865..28642751,2	MCF-7	breast:
5	chr6:28638654..28641368-chr6:28714122..28716293,2	K562	blood:
6	chr6:28625879..28628361-chr6:28638766..28641514,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11753292	1.00[ASN][1000 genomes]
rs11754112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754599	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11757235	1.00[ASN][1000 genomes]
rs11758822	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12110753	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12111360	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1319076	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382587	1.00[ASN][1000 genomes]
rs2893967	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34211304	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34560199	1.00[ASN][1000 genomes]
rs34668037	1.00[ASN][1000 genomes]
rs3886843	1.00[ASN][1000 genomes]
rs4435933	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56958518	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73391123	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402976	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73402978	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73402982	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73402983	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73404961	0.89[AFR][1000 genomes]
rs73404965	0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73407134	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73407157	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73407159	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73409125	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738979	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7770993	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7774808	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9791301	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28627600-28641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28634800-28643000	Weak transcription	K562	blood

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