Variant report

Variant	rs73404961
Chromosome Location	chr6:28561620-28561621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11754112	0.87[AFR][1000 genomes]
rs11754599	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11758822	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12110753	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1319076	0.88[AFR][1000 genomes]
rs2893967	0.88[AFR][1000 genomes]
rs4435933	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56958518	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73391123	0.88[AFR][1000 genomes]
rs73400305	1.00[ASN][1000 genomes]
rs73402976	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73402978	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73402982	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73402983	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73404965	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73407124	0.85[AMR][1000 genomes]
rs73407134	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73407157	0.92[AFR][1000 genomes]
rs73407159	0.92[AFR][1000 genomes]
rs73409121	0.89[AFR][1000 genomes]
rs73409140	0.89[AFR][1000 genomes]
rs7738979	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7770993	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7774808	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9791301	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28558000-28565000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:28559600-28565800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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