Variant report

Variant	rs73400305
Chromosome Location	chr6:28448185-28448186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28364005..28367844-chr6:28444304..28449588,6	K562	blood:
2	chr6:28368732..28370579-chr6:28448178..28450277,2	K562	blood:
3	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
4	chr6:28447279..28449028-chr6:28691050..28693520,2	K562	blood:
5	chr6:27100692..27102905-chr6:28448028..28449823,2	K562	blood:
6	chr6:27100850..27102905-chr6:28448028..28449687,2	K562	blood:
7	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:
8	chr6:28446745..28449657-chr6:28455146..28458037,3	MCF-7	breast:
9	chr6:28429774..28433738-chr6:28446930..28450436,3	K562	blood:
10	chr6:28432238..28433999-chr6:28448151..28450436,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1024629	1.00[AMR][1000 genomes]
rs1159276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2223287	0.83[AFR][1000 genomes]
rs2394123	0.83[AFR][1000 genomes]
rs28382583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28382610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35951965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36055795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56932220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062347	1.00[AMR][1000 genomes]
rs57154605	1.00[AMR][1000 genomes]
rs57229798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58417073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58703563	1.00[AFR][1000 genomes]
rs58863222	1.00[AMR][1000 genomes]
rs58928655	1.00[AMR][1000 genomes]
rs59126940	1.00[AMR][1000 genomes]
rs59842349	1.00[AMR][1000 genomes]
rs62638674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903306	1.00[AMR][1000 genomes]
rs6917449	1.00[AFR][1000 genomes]
rs73385824	0.83[AFR][1000 genomes]
rs73385893	1.00[AMR][1000 genomes]
rs73391124	0.83[AFR][1000 genomes]
rs73391129	0.83[AFR][1000 genomes]
rs73396315	1.00[AMR][1000 genomes]
rs73396317	1.00[AMR][1000 genomes]
rs73396335	1.00[AMR][1000 genomes]
rs73399102	1.00[AMR][1000 genomes]
rs73399652	1.00[AMR][1000 genomes]
rs73399679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399695	1.00[AMR][1000 genomes]
rs73399697	1.00[AMR][1000 genomes]
rs73400304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402526	0.83[AFR][1000 genomes]
rs73402530	0.83[AFR][1000 genomes]
rs73402963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404961	1.00[ASN][1000 genomes]
rs73407107	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409147	0.83[AFR][1000 genomes]
rs7453044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28447800-28448800	Flanking Active TSS	K562	blood

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