Variant report

Variant	rs73399697
Chromosome Location	chr6:28334123-28334124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28303794..28306200-chr6:28332780..28334307,2	K562	blood:
2	chr6:28333760..28336072-chr6:28337561..28339337,2	K562	blood:
3	chr6:28323337..28330678-chr6:28330738..28334657,8	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1024629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1159276	1.00[AMR][1000 genomes]
rs28382583	1.00[AMR][1000 genomes]
rs28382610	1.00[AMR][1000 genomes]
rs35951965	1.00[AMR][1000 genomes]
rs36055795	1.00[AMR][1000 genomes]
rs56932220	1.00[AMR][1000 genomes]
rs57062347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57154605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57229798	1.00[AMR][1000 genomes]
rs58417073	1.00[AMR][1000 genomes]
rs58863222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58928655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59126940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59842349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62638674	1.00[AMR][1000 genomes]
rs6903306	1.00[AMR][1000 genomes]
rs73385893	1.00[AMR][1000 genomes]
rs73396315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399652	1.00[AMR][1000 genomes]
rs73399679	1.00[AMR][1000 genomes]
rs73399695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400304	1.00[AMR][1000 genomes]
rs73400305	1.00[AMR][1000 genomes]
rs73402963	1.00[AMR][1000 genomes]
rs73402965	1.00[AMR][1000 genomes]
rs7453044	1.00[AMR][1000 genomes]
rs7766194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28318400-28350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:28324400-28336000	Weak transcription	GM12878-XiMat	blood
3	chr6:28324400-28347600	Weak transcription	NHDF-Ad	bronchial
4	chr6:28324400-28347800	Weak transcription	Fetal Brain Male	brain
5	chr6:28324400-28348200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:28324400-28357200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:28324400-28357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:28324600-28349400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:28324600-28349600	Weak transcription	NHEK	skin
10	chr6:28324600-28358600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:28324800-28341600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:28325400-28350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:28326800-28335400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:28326800-28336200	Strong transcription	Adipose Nuclei	Adipose
15	chr6:28327000-28334800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:28327000-28334800	Strong transcription	Placenta	Placenta
17	chr6:28327000-28336200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:28327000-28336200	Strong transcription	Fetal Stomach	stomach
19	chr6:28327000-28337600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:28327200-28334600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:28327200-28335400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:28327200-28338400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:28327400-28334200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:28327400-28334400	Strong transcription	Fetal Intestine Large	intestine
25	chr6:28327800-28335200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:28327800-28335600	Strong transcription	K562	blood
27	chr6:28328000-28334600	Strong transcription	Stomach Smooth Muscle	stomach
28	chr6:28328000-28337000	Strong transcription	Liver	Liver
29	chr6:28328200-28334200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:28328200-28334400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:28328200-28334600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:28328200-28334600	Strong transcription	Osteobl	bone
33	chr6:28328200-28334800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:28328200-28334800	Strong transcription	Fetal Lung	lung
35	chr6:28328200-28336800	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:28328800-28334600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:28328800-28334800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr6:28328800-28334800	Strong transcription	Brain Anterior Caudate	brain
39	chr6:28329200-28334200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:28329400-28334600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:28329600-28334200	Strong transcription	Fetal Intestine Small	intestine
42	chr6:28329800-28334400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:28329800-28334400	Strong transcription	Brain Hippocampus Middle	brain
44	chr6:28330200-28334600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr6:28330400-28334800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:28330600-28334200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:28330600-28334600	Strong transcription	Brain Germinal Matrix	brain
48	chr6:28330600-28335400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:28330800-28334200	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr6:28330800-28334200	Strong transcription	Brain Substantia Nigra	brain

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