Variant report

Variant	rs59842349
Chromosome Location	chr6:28371079-28371080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28371032-28371082	HMEC	breast:	n/a
2	chr6:28371032-28371082	SK-N-MC	brain:	n/a
3	chr6:28371032-28371082	SK-N-SH	brain:	n/a
4	chr6:28371032-28371082	HPAEpiC	pulmonary alveolar:	n/a
5	chr6:28371032-28371082	AG09309	skin:	n/a
6	chr6:28371032-28371082	K562	blood:	n/a
7	chr6:28371032-28371082	HCPEpiC	choroid plexus:	n/a
8	chr6:28371032-28371082	NT2-D1	testis:	n/a
9	chr6:28371032-28371082	ECC-1	luminal epithelium:	n/a
10	chr6:28371032-28371082	MCF10A-Er-Src	breast:	n/a
11	chr6:28371032-28371082	HRE	kidney:	n/a
12	chr6:28371032-28371082	AG10803	skin:	n/a
13	chr6:28371032-28371082	GM19239	blood:	n/a
14	chr6:28371032-28371082	BJ	skin:	n/a
15	chr6:28371032-28371082	GM12892	blood:	n/a
16	chr6:28371032-28371082	CMK	blood:	n/a
17	chr6:28371032-28371082	HAEpiC	amniotic membrane:	n/a
18	chr6:28371032-28371082	H1-hESC	embryonic stem cell:	embryo
19	chr6:28371032-28371082	SKMC	muscle:	n/a
20	chr6:28371032-28371082	HUVEC	blood vessel:	n/a
21	chr6:28371032-28371082	PrEC	prostate:	n/a
22	chr6:28371032-28371082	HEEpiC	esophagus:	n/a
23	chr6:28371032-28371082	AG04450	lung:	fetal
24	chr6:28371032-28371082	HNPCEpiC	eye:	n/a
25	chr6:28371032-28371082	Hela-S3	cervix:	n/a
26	chr6:28371032-28371082	HepG2	liver:	n/a
27	chr6:28371032-28371082	PFSK-1	brain:	n/a
28	chr6:28371032-28371082	T-47D	breast:	n/a
29	chr6:28371032-28371082	AG09319	gingival:	n/a
30	chr6:28371032-28371082	AG04449	skin:	fetal
31	chr6:28371032-28371082	NHBE	bronchial:	n/a
32	chr6:28371032-28371082	HCT-116	colon:	n/a
33	chr6:28371032-28371082	SK-N-SH_RA	brain:	n/a
34	chr6:28371032-28371082	MCF-7	breast:	n/a
35	chr6:28371032-28371082	HRCEpiC	kidney:	n/a
36	chr6:28371032-28371082	ProgFib	skin:	n/a
37	chr6:28371032-28371082	HEK293	kidney:	embryo
38	chr6:28371032-28371082	HCM	heart:	n/a
39	chr6:28371032-28371082	Hepatocyte	liver:	n/a
40	chr6:28371032-28371082	A549	lung:	n/a
41	chr6:28371032-28371082	AoSMC	blood vessel:	n/a
42	chr6:28371032-28371082	HCF	heart:	n/a
43	chr6:28371032-28371082	ovcar-3	ovarian:	n/a
44	chr6:28371032-28371082	IMR90	lung:	fetal
45	chr6:28371032-28371082	GM12878	blood:	n/a
46	chr6:28371032-28371082	U87	brain:	n/a
47	chr6:28371032-28371082	HL-60	blood:	n/a
48	chr6:28371032-28371082	HIPEpiC	eye:	n/a
49	chr6:28371032-28371082	Jurkat	blood:	n/a
50	chr6:28371032-28371082	LNCaP	prostate:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
2	chr6:28114111..28116843-chr6:28370427..28372870,2	K562	blood:
3	chr6:28174164..28176650-chr6:28369447..28371283,2	K562	blood:
4	chr6:28369764..28371489-chr6:28380154..28383821,4	K562	blood:
5	chr6:28302778..28306478-chr6:28369638..28373643,3	K562	blood:
6	chr6:28370825..28372910-chr6:28390622..28392729,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZSCAN12	CpG island
ENSG00000235109	Chromatin interaction
ENSG00000251877	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1024629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1159276	1.00[AMR][1000 genomes]
rs28382583	1.00[AMR][1000 genomes]
rs28382610	1.00[AMR][1000 genomes]
rs35951965	1.00[AMR][1000 genomes]
rs36055795	1.00[AMR][1000 genomes]
rs56932220	1.00[AMR][1000 genomes]
rs57062347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57154605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57229798	1.00[AMR][1000 genomes]
rs58417073	1.00[AMR][1000 genomes]
rs58863222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58928655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59126940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62638674	1.00[AMR][1000 genomes]
rs6903306	1.00[AMR][1000 genomes]
rs73385893	1.00[AMR][1000 genomes]
rs73396315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399652	1.00[AMR][1000 genomes]
rs73399679	1.00[AMR][1000 genomes]
rs73399695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400304	1.00[AMR][1000 genomes]
rs73400305	1.00[AMR][1000 genomes]
rs73402963	1.00[AMR][1000 genomes]
rs73402965	1.00[AMR][1000 genomes]
rs73407107	1.00[AMR][1000 genomes]
rs73407110	1.00[AMR][1000 genomes]
rs7453044	1.00[AMR][1000 genomes]
rs7766194	1.00[AMR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28368600-28371200	Enhancers	K562	blood
2	chr6:28370800-28371200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:28371000-28371200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links