Variant report

Variant	rs7453044
Chromosome Location	chr6:28390804-28390805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28390398..28392930-chr6:28395199..28398373,4	K562	blood:
2	chr6:28356707..28359445-chr6:28388134..28391982,4	K562	blood:
3	chr6:28389572..28392930-chr6:28395042..28397704,3	K562	blood:
4	chr6:28356866..28359445-chr6:28388346..28391982,3	K562	blood:
5	chr6:28370825..28372910-chr6:28390622..28392729,2	MCF-7	breast:
6	chr6:28385891..28388590-chr6:28390011..28392158,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSCAN23-1	chr6:28390179-28391617	NONHSAT108462

No data

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1024629	1.00[AMR][1000 genomes]
rs1159276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2223287	0.83[AFR][1000 genomes]
rs28382583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28382610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35951965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36055795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56932220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062347	1.00[AMR][1000 genomes]
rs57154605	1.00[AMR][1000 genomes]
rs57229798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58417073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58703563	1.00[AFR][1000 genomes]
rs58863222	1.00[AMR][1000 genomes]
rs58928655	1.00[AMR][1000 genomes]
rs59126940	1.00[AMR][1000 genomes]
rs59842349	1.00[AMR][1000 genomes]
rs62638674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903306	1.00[AMR][1000 genomes]
rs6917449	1.00[AFR][1000 genomes]
rs73385824	0.83[AFR][1000 genomes]
rs73385893	1.00[AMR][1000 genomes]
rs73396315	1.00[AMR][1000 genomes]
rs73396317	1.00[AMR][1000 genomes]
rs73396335	1.00[AMR][1000 genomes]
rs73399102	1.00[AMR][1000 genomes]
rs73399652	1.00[AMR][1000 genomes]
rs73399679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399695	1.00[AMR][1000 genomes]
rs73399697	1.00[AMR][1000 genomes]
rs73400304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400574	0.83[AFR][1000 genomes]
rs73402526	0.83[AFR][1000 genomes]
rs73402530	0.83[AFR][1000 genomes]
rs73402963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407107	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7766194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836974	chr6:28376981-28398748	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28383600-28392600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:28383800-28393000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:28385400-28391000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:28385400-28391200	Weak transcription	HSMMtube	muscle
7	chr6:28385400-28402000	Weak transcription	Fetal Kidney	kidney
8	chr6:28385400-28402200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:28385600-28410800	Weak transcription	Lung	lung
10	chr6:28385800-28391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:28386000-28402200	Weak transcription	Osteobl	bone
12	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:28386200-28391000	Weak transcription	Psoas Muscle	Psoas
14	chr6:28386200-28395800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:28386600-28391000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:28386600-28392200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:28386600-28392800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:28386600-28397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:28386800-28392000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:28386800-28393600	Weak transcription	Fetal Heart	heart
21	chr6:28386800-28402200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:28387600-28393000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:28387600-28394200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:28387800-28393000	Weak transcription	Fetal Brain Male	brain
25	chr6:28387800-28395400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
27	chr6:28388000-28392800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
29	chr6:28388400-28393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:28388400-28399200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:28389000-28391200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:28389000-28391800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:28389000-28392600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:28389200-28393200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:28389200-28410200	Weak transcription	NHLF	lung
36	chr6:28389400-28393000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:28389400-28403200	Weak transcription	Adipose Nuclei	Adipose
38	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:28389600-28398200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:28389800-28392000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:28389800-28392800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:28389800-28393000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
48	chr6:28390000-28391600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:28390000-28391600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:28390000-28392400	Strong transcription	Fetal Brain Female	brain

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