Variant report

Variant	rs6917449
Chromosome Location	chr6:28406877-28406878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28365707..28367245-chr6:28405846..28408516,2	K562	blood:
2	chr6:28382729..28384623-chr6:28406130..28408766,2	K562	blood:

rs_ID	r²[population]
rs1159276	1.00[AFR][1000 genomes]
rs2223287	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2232423	1.00[YRI][hapmap]
rs2232426	1.00[YRI][hapmap]
rs2232429	1.00[YRI][hapmap]
rs28382583	1.00[AFR][1000 genomes]
rs28382610	1.00[AFR][1000 genomes]
rs35951965	1.00[AFR][1000 genomes]
rs36055795	1.00[AFR][1000 genomes]
rs56932220	1.00[AFR][1000 genomes]
rs57229798	1.00[AFR][1000 genomes]
rs58417073	1.00[AFR][1000 genomes]
rs58703563	1.00[AFR][1000 genomes]
rs62638674	1.00[AFR][1000 genomes]
rs73385824	0.83[AFR][1000 genomes]
rs73399679	1.00[AFR][1000 genomes]
rs73400304	1.00[AFR][1000 genomes]
rs73400305	1.00[AFR][1000 genomes]
rs73400574	0.83[AFR][1000 genomes]
rs73402526	0.83[AFR][1000 genomes]
rs73402530	0.83[AFR][1000 genomes]
rs73402963	1.00[AFR][1000 genomes]
rs73402965	1.00[AFR][1000 genomes]
rs73407107	0.83[AFR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes]
rs7453044	1.00[AFR][1000 genomes]
rs7767244	1.00[YRI][hapmap]

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28385600-28410800	Weak transcription	Lung	lung
4	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
7	chr6:28389200-28410200	Weak transcription	NHLF	lung
8	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
14	chr6:28390200-28410400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:28391400-28410400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:28391400-28410800	Weak transcription	Placenta	Placenta
17	chr6:28391600-28410200	Weak transcription	Brain Anterior Caudate	brain
18	chr6:28391600-28410800	Weak transcription	Pancreas	Pancrea
19	chr6:28392000-28410200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:28392000-28410400	Weak transcription	NHEK	skin
21	chr6:28392200-28410400	Weak transcription	Right Ventricle	heart
22	chr6:28392400-28410000	Weak transcription	HMEC	breast
23	chr6:28392400-28410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:28393600-28410800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:28393800-28410600	Weak transcription	Aorta	Aorta
26	chr6:28394200-28409800	Weak transcription	Fetal Heart	heart
27	chr6:28395200-28410200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:28395400-28409400	Weak transcription	Fetal Brain Male	brain
29	chr6:28398000-28410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:28398600-28410400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:28398600-28410600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:28399400-28410400	Weak transcription	HSMM	muscle
33	chr6:28400600-28410200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:28402600-28410200	Weak transcription	Primary T cells from cord blood	blood
35	chr6:28402600-28410200	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:28402600-28410600	Weak transcription	HSMMtube	muscle
37	chr6:28402800-28410200	Weak transcription	Fetal Kidney	kidney
38	chr6:28402800-28410400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:28402800-28410600	Weak transcription	Ovary	ovary
40	chr6:28403200-28410200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:28403200-28410200	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:28403200-28410200	Weak transcription	Osteobl	bone
43	chr6:28403200-28410400	Weak transcription	NH-A	brain
44	chr6:28403400-28407400	Weak transcription	Fetal Lung	lung
45	chr6:28403400-28410000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:28403400-28410000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:28403400-28410200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:28403600-28409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:28403600-28410200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:28403800-28407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links