Variant report

Variant	rs73407140
Chromosome Location	chr6:28612522-28612523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28611535..28613036-chr6:28614301..28616480,2	K562	blood:
2	chr6:28604890..28606588-chr6:28612280..28614878,2	K562	blood:
3	chr6:28574634..28576154-chr6:28610831..28612633,2	MCF-7	breast:
4	chr6:28611110..28613719-chr6:28615140..28617498,3	K562	blood:
5	chr6:28606676..28609643-chr6:28610994..28614558,3	K562	blood:
6	chr6:28579846..28585618-chr6:28609150..28616432,10	K562	blood:

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction
ENSG00000235570	Chromatin interaction
ENSG00000272278	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1024629	1.00[AMR][1000 genomes]
rs1159276	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2394123	1.00[AFR][1000 genomes]
rs28382583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28382610	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35951965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36055795	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56932220	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57154605	1.00[AMR][1000 genomes]
rs57229798	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58417073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58863222	1.00[AMR][1000 genomes]
rs58928655	1.00[AMR][1000 genomes]
rs59126940	1.00[AMR][1000 genomes]
rs6917449	0.83[AFR][1000 genomes]
rs73391124	1.00[AFR][1000 genomes]
rs73391129	1.00[AFR][1000 genomes]
rs73391149	0.83[AFR][1000 genomes]
rs73396315	1.00[AMR][1000 genomes]
rs73396317	1.00[AMR][1000 genomes]
rs73396335	1.00[AMR][1000 genomes]
rs73399102	1.00[AMR][1000 genomes]
rs73400304	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402963	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403145	0.83[AFR][1000 genomes]
rs73403157	0.83[AFR][1000 genomes]
rs73403158	0.83[AFR][1000 genomes]
rs73403162	0.83[AFR][1000 genomes]
rs73403170	0.83[AFR][1000 genomes]
rs73407107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409147	1.00[AFR][1000 genomes]
rs7453044	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28611400-28613600	Weak transcription	HepG2	liver
2	chr6:28611600-28616000	Weak transcription	K562	blood
3	chr6:28612200-28615800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:28612200-28615800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:28612200-28616000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:28612200-28616000	Weak transcription	Placenta	Placenta
7	chr6:28612400-28613400	Weak transcription	A549	lung
8	chr6:28612400-28615800	Weak transcription	NHEK	skin
9	chr6:28612400-28616000	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links