Variant report

Variant	rs73403158
Chromosome Location	chr6:28738167-28738168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28689073..28690596-chr6:28736279..28738758,2	K562	blood:
2	chr6:28555206..28557867-chr6:28736797..28739499,2	K562	blood:
3	chr6:28737444..28738535-chr6:28984421..28985606,3	MCF-7	breast:
4	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:
5	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
6	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
7	chr6:28737526..28738316-chr6:28777463..28778342,2	K562	blood:
8	chr6:28737576..28739106-chr6:28862683..28864792,2	K562	blood:
9	chr6:28737910..28739642-chr6:28829627..28831368,2	K562	blood:
10	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:
11	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2394123	0.83[AFR][1000 genomes]
rs73391124	0.83[AFR][1000 genomes]
rs73391129	0.83[AFR][1000 genomes]
rs73391149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407107	0.83[AFR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes]
rs73407253	1.00[AMR][1000 genomes]
rs73407264	1.00[AMR][1000 genomes]
rs73409147	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28735400-28738600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28737000-28738200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:28737000-28738400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:28737200-28738200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:28737200-28738200	Bivalent Enhancer	HMEC	breast
7	chr6:28737200-28739600	Enhancers	K562	blood
8	chr6:28737400-28738400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:28737600-28738200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr6:28737600-28738400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
11	chr6:28737800-28738200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr6:28737800-28738200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr6:28737800-28738400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
14	chr6:28737800-28738400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:28737800-28738400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
16	chr6:28738000-28738200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:28738000-28738400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr6:28738000-28738400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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