Variant report

Variant	rs73409147
Chromosome Location	chr6:28652627-28652628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1159276	0.83[AFR][1000 genomes]
rs2394123	1.00[AFR][1000 genomes]
rs28382583	0.83[AFR][1000 genomes]
rs28382610	0.83[AFR][1000 genomes]
rs35951965	0.83[AFR][1000 genomes]
rs36055795	0.83[AFR][1000 genomes]
rs56932220	0.83[AFR][1000 genomes]
rs73391124	1.00[AFR][1000 genomes]
rs73391129	1.00[AFR][1000 genomes]
rs73391149	0.83[AFR][1000 genomes]
rs73400304	0.83[AFR][1000 genomes]
rs73400305	0.83[AFR][1000 genomes]
rs73402963	0.83[AFR][1000 genomes]
rs73402965	0.83[AFR][1000 genomes]
rs73403145	0.83[AFR][1000 genomes]
rs73403157	0.83[AFR][1000 genomes]
rs73403158	0.83[AFR][1000 genomes]
rs73403162	0.83[AFR][1000 genomes]
rs73403170	0.83[AFR][1000 genomes]
rs73407107	1.00[AFR][1000 genomes]
rs73407110	1.00[AFR][1000 genomes]
rs73407140	1.00[AFR][1000 genomes]
rs73409143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28642600-28653800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28651000-28654200	Enhancers	K562	blood
3	chr6:28651400-28654000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:28652200-28653400	Weak transcription	Hela-S3	cervix
5	chr6:28652200-28653400	Weak transcription	HUVEC	blood vessel
6	chr6:28652200-28654000	Weak transcription	A549	lung
7	chr6:28652600-28653000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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