Variant report

Variant	rs73403157
Chromosome Location	chr6:28736299-28736300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2394123	0.83[AFR][1000 genomes]
rs73391124	0.83[AFR][1000 genomes]
rs73391129	0.83[AFR][1000 genomes]
rs73391149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407107	0.83[AFR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes]
rs73407253	1.00[AMR][1000 genomes]
rs73407264	1.00[AMR][1000 genomes]
rs73409147	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28735400-28736400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:28735400-28737400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr6:28735400-28738600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:28735600-28737200	Weak transcription	K562	blood
6	chr6:28735800-28736400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr6:28736200-28737200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr6:28736200-28737400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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