Variant report

Variant	rs73403145
Chromosome Location	chr6:28728023-28728024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
2	chr6:28708828..28711796-chr6:28725533..28729587,4	K562	blood:
3	chr6:28654726..28657643-chr6:28726674..28728730,2	K562	blood:
4	chr6:28688164..28689744-chr6:28726401..28728148,2	K562	blood:
5	chr6:28700497..28703412-chr6:28724677..28728589,3	K562	blood:
6	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
7	chr6:28712043..28717130-chr6:28723838..28729658,8	K562	blood:
8	chr6:28694596..28696864-chr6:28727942..28730829,2	K562	blood:
9	chr6:28687184..28690282-chr6:28725684..28728661,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2394123	0.83[AFR][1000 genomes]
rs73391124	0.83[AFR][1000 genomes]
rs73391129	0.83[AFR][1000 genomes]
rs73391149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407107	0.83[AFR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes]
rs73407253	1.00[AMR][1000 genomes]
rs73407264	1.00[AMR][1000 genomes]
rs73409147	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28727200-28731200	Weak transcription	K562	blood
2	chr6:28727200-28731400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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