Variant report

Variant	rs73391149
Chromosome Location	chr6:28687457-28687458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28686115..28688745-chr6:28748402..28751261,2	K562	blood:
2	chr6:28456451..28458356-chr6:28686774..28688606,2	K562	blood:
3	chr6:28686813..28688652-chr6:28706969..28709291,2	K562	blood:
4	chr6:28687230..28688788-chr6:28703405..28705827,2	K562	blood:
5	chr6:28686790..28690321-chr6:28972014..28975051,3	K562	blood:
6	chr6:28452420..28454018-chr6:28686803..28689231,2	K562	blood:
7	chr6:28687325..28688855-chr6:28783516..28785419,2	K562	blood:
8	chr6:28686813..28689115-chr6:28758010..28760174,2	K562	blood:
9	chr6:28687184..28689466-chr6:28889833..28891936,2	K562	blood:
10	chr6:28682762..28689665-chr6:28860684..28866524,9	K562	blood:
11	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
12	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:
13	chr6:28687184..28690282-chr6:28725684..28728661,4	K562	blood:
14	chr6:28686780..28689583-chr6:28731850..28734136,2	K562	blood:
15	chr6:28687246..28689887-chr6:28948960..28952398,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2394123	0.83[AFR][1000 genomes]
rs73391124	0.83[AFR][1000 genomes]
rs73391129	0.83[AFR][1000 genomes]
rs73403145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407107	0.83[AFR][1000 genomes]
rs73407110	0.83[AFR][1000 genomes]
rs73407140	0.83[AFR][1000 genomes]
rs73407253	1.00[AMR][1000 genomes]
rs73407264	1.00[AMR][1000 genomes]
rs73409147	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28687200-28687600	Enhancers	Hela-S3	cervix
2	chr6:28687200-28688000	Enhancers	HepG2	liver
3	chr6:28687200-28689000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:28687200-28689200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:28687400-28687600	Bivalent Enhancer	Small Intestine	intestine
6	chr6:28687400-28688600	Active TSS	K562	blood
7	chr6:28687400-28689000	Active TSS	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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