Variant report
| Variant | rs73391124 |
|---|---|
| Chromosome Location | chr6:28665231-28665232 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPX5-3 | chr6:28664985-28667503 | ucscGeneNc_uc003nlp_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1159276 | 0.83[AFR][1000 genomes] |
| rs2394123 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28382583 | 0.83[AFR][1000 genomes] |
| rs28382610 | 0.83[AFR][1000 genomes] |
| rs35951965 | 0.83[AFR][1000 genomes] |
| rs36055795 | 0.83[AFR][1000 genomes] |
| rs56932220 | 0.83[AFR][1000 genomes] |
| rs73391129 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73391149 | 0.83[AFR][1000 genomes] |
| rs73400304 | 0.83[AFR][1000 genomes] |
| rs73400305 | 0.83[AFR][1000 genomes] |
| rs73402963 | 0.83[AFR][1000 genomes] |
| rs73402965 | 0.83[AFR][1000 genomes] |
| rs73403145 | 0.83[AFR][1000 genomes] |
| rs73403157 | 0.83[AFR][1000 genomes] |
| rs73403158 | 0.83[AFR][1000 genomes] |
| rs73403162 | 0.83[AFR][1000 genomes] |
| rs73403170 | 0.83[AFR][1000 genomes] |
| rs73407107 | 1.00[AFR][1000 genomes] |
| rs73407110 | 1.00[AFR][1000 genomes] |
| rs73407140 | 1.00[AFR][1000 genomes] |
| rs73409147 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830621 | chr6:28473951-28675709 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031671 | chr6:28575172-28678126 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28658200-28667400 | Weak transcription | K562 | blood |
| 2 | chr6:28663000-28667400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
