The 2.0 version of rSNPBase

Variant report

Variant rs57154605
Chromosome Location chr6:28397256-28397257
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:28371200-28410400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr6:28384600-28410200 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr6:28385400-28402000 Weak transcription Fetal Kidney kidney
4 chr6:28385400-28402200 Weak transcription H1 Cell Line embryonic stem cell
5 chr6:28385600-28410800 Weak transcription Lung lung
6 chr6:28386000-28402200 Weak transcription Osteobl bone
7 chr6:28386000-28410400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr6:28386600-28397800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr6:28386800-28402200 Weak transcription Placenta Amnion Placenta Amnion
10 chr6:28387800-28410200 Weak transcription Brain Angular Gyrus brain
11 chr6:28388000-28410400 Weak transcription NHDF-Ad bronchial
12 chr6:28388400-28399200 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr6:28389200-28410200 Weak transcription NHLF lung
14 chr6:28389400-28403200 Weak transcription Adipose Nuclei Adipose
15 chr6:28389400-28410000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr6:28389600-28398200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr6:28389600-28409800 Weak transcription Brain Cingulate Gyrus brain
18 chr6:28389600-28410200 Weak transcription H9 Cell Line embryonic stem cell
19 chr6:28389600-28410400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr6:28389600-28410400 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr6:28389800-28410800 Weak transcription Colonic Mucosa Colon
22 chr6:28390200-28410400 Weak transcription Rectal Smooth Muscle rectum
23 chr6:28391400-28402400 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr6:28391400-28410400 Weak transcription Fetal Intestine Large intestine
25 chr6:28391400-28410800 Weak transcription Placenta Placenta
26 chr6:28391600-28397600 Weak transcription Ovary ovary
27 chr6:28391600-28401800 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr6:28391600-28402000 Weak transcription Brain Hippocampus Middle brain
29 chr6:28391600-28402000 Weak transcription Left Ventricle heart
30 chr6:28391600-28402000 Weak transcription Psoas Muscle Psoas
31 chr6:28391600-28402200 Weak transcription HSMMtube muscle
32 chr6:28391600-28402200 Weak transcription NH-A brain
33 chr6:28391600-28410200 Weak transcription Brain Anterior Caudate brain
34 chr6:28391600-28410800 Weak transcription Pancreas Pancrea
35 chr6:28392000-28397800 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr6:28392000-28398200 Weak transcription HSMM muscle
37 chr6:28392000-28410200 Weak transcription Muscle Satellite Cultured Cells --
38 chr6:28392000-28410400 Weak transcription NHEK skin
39 chr6:28392200-28402000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr6:28392200-28410400 Weak transcription Right Ventricle heart
41 chr6:28392400-28397800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr6:28392400-28410000 Weak transcription HMEC breast
43 chr6:28392400-28410400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr6:28393600-28410800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr6:28393800-28402400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr6:28393800-28404200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr6:28393800-28410600 Weak transcription Aorta Aorta
48 chr6:28394000-28397400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr6:28394000-28397600 Weak transcription Fetal Intestine Small intestine
50 chr6:28394000-28398000 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015