Variant report
| Variant | rs7770993 |
|---|---|
| Chromosome Location | chr6:28606814-28606815 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28606676..28609643-chr6:28610994..28614558,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11754112 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs11754599 | 0.83[AFR][1000 genomes] |
| rs11755442 | 1.00[EUR][1000 genomes] |
| rs11758822 | 0.86[AFR][1000 genomes] |
| rs12110753 | 0.86[AFR][1000 genomes] |
| rs12111360 | 0.82[AFR][1000 genomes] |
| rs1319076 | 0.92[AFR][1000 genomes] |
| rs2893967 | 0.92[AFR][1000 genomes] |
| rs34211304 | 0.81[AMR][1000 genomes] |
| rs4435933 | 0.88[AFR][1000 genomes] |
| rs56958518 | 0.86[AFR][1000 genomes] |
| rs73391123 | 0.92[AFR][1000 genomes] |
| rs73402976 | 0.84[AFR][1000 genomes] |
| rs73402978 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73402982 | 0.86[AFR][1000 genomes] |
| rs73402983 | 0.86[AFR][1000 genomes] |
| rs73404961 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73404965 | 0.88[AFR][1000 genomes] |
| rs73407124 | 1.00[EUR][1000 genomes] |
| rs73407134 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73407157 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73407159 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73409121 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs73409125 | 0.81[AMR][1000 genomes] |
| rs73409140 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs7738979 | 0.88[AFR][1000 genomes] |
| rs7751999 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7774808 | 0.86[AFR][1000 genomes] |
| rs9791301 | 0.86[AFR][1000 genomes] |
| rs9918417 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020689 | chr6:28449137-28635171 | Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv830621 | chr6:28473951-28675709 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031671 | chr6:28575172-28678126 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28604000-28608800 | Weak transcription | Placenta | Placenta |
| 2 | chr6:28605600-28611000 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 3 | chr6:28606400-28607000 | Bivalent/Poised TSS | Fetal Kidney | kidney |
