Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28633014..28636494-chr6:28636598..28640910,4	K562	blood:
2	chr6:28626906..28629366-chr6:28632786..28636126,4	K562	blood:
3	chr6:28624820..28630084-chr6:28630901..28635993,6	K562	blood:
4	chr6:28632209..28634978-chr6:28647206..28648913,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11754112	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11754599	0.88[AFR][1000 genomes]
rs11755442	1.00[EUR][1000 genomes]
rs11758822	0.90[AFR][1000 genomes]
rs12110753	0.90[AFR][1000 genomes]
rs12111360	0.86[AFR][1000 genomes]
rs1319076	0.96[AFR][1000 genomes]
rs2893967	0.96[AFR][1000 genomes]
rs34211304	0.87[AMR][1000 genomes]
rs4435933	0.92[AFR][1000 genomes]
rs56958518	0.90[AFR][1000 genomes]
rs73391123	0.96[AFR][1000 genomes]
rs73402976	0.88[AFR][1000 genomes]
rs73402978	0.88[AFR][1000 genomes]
rs73402982	0.90[AFR][1000 genomes]
rs73402983	0.90[AFR][1000 genomes]
rs73404961	0.92[AFR][1000 genomes]
rs73404965	0.92[AFR][1000 genomes]
rs73407124	1.00[EUR][1000 genomes]
rs73407134	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409121	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73409125	0.87[AMR][1000 genomes]
rs73409140	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7738979	0.92[AFR][1000 genomes]
rs7751999	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770993	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774808	0.90[AFR][1000 genomes]
rs9791301	0.90[AFR][1000 genomes]
rs9918417	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28627600-28641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28633200-28633600	Weak transcription	K562	blood

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