Variant report

Variant	rs12111360
Chromosome Location	chr6:28667448-28667449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28664889..28672891-chr6:28674189..28678694,12	K562	blood:
2	chr6:28666298..28671313-chr6:28695437..28699521,5	K562	blood:
3	chr6:28653833..28655870-chr6:28666248..28668111,2	K562	blood:
4	chr6:28663130..28666549-chr6:28666706..28669998,7	K562	blood:
5	chr6:28665488..28667691-chr6:28756212..28758692,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPX5-3	chr6:28664985-28667503	ucscGeneNc_uc003nlp_1

No data

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11753292	1.00[ASN][1000 genomes]
rs11754112	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754599	1.00[ASN][1000 genomes]
rs11757235	1.00[ASN][1000 genomes]
rs11758822	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12110753	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1319076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382587	1.00[ASN][1000 genomes]
rs2893967	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34211304	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34560199	1.00[ASN][1000 genomes]
rs34668037	1.00[ASN][1000 genomes]
rs3886843	1.00[ASN][1000 genomes]
rs4435933	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56958518	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73391123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402976	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73402978	1.00[ASN][1000 genomes]
rs73402982	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73402983	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73404965	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73407134	0.82[AFR][1000 genomes]
rs73407157	0.86[AFR][1000 genomes]
rs73407159	0.86[AFR][1000 genomes]
rs73409121	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409125	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409140	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738979	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7770993	0.82[AFR][1000 genomes]
rs7774808	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9791301	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28667400-28668000	Enhancers	K562	blood
2	chr6:28667400-28669000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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