Variant report

Variant	rs11757448
Chromosome Location	chr6:24613438-24613439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10456043	0.81[EUR][1000 genomes]
rs10456309	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10456312	0.86[EUR][1000 genomes]
rs10946707	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11759149	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12195384	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12207801	0.85[CEU][hapmap]
rs12209409	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210323	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12210684	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12213116	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12213672	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13206235	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208577	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13209442	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13212181	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17307430	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34211261	0.81[EUR][1000 genomes]
rs35374669	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24612800-24616400	Enhancers	Fetal Brain Male	brain
2	chr6:24613400-24613600	Enhancers	Fetal Brain Female	brain
3	chr6:24613400-24614600	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links