Variant report
| Variant | rs11759149 |
|---|---|
| Chromosome Location | chr6:24628090-24628091 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10456043 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10456309 | 1.00[CEU][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10456312 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10456313 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10946707 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11757448 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12195384 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12207801 | 0.85[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap] |
| rs12209409 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12210323 | 0.87[EUR][1000 genomes] |
| rs12210684 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12213116 | 0.87[EUR][1000 genomes] |
| rs12213672 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13206235 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13208577 | 0.87[EUR][1000 genomes] |
| rs13209442 | 1.00[CEU][hapmap] |
| rs13212181 | 0.87[EUR][1000 genomes] |
| rs13220596 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17307430 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34211261 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35374669 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020653 | chr6:24557870-24638244 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv3508002 | chr6:24618580-24732946 | Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| 3 | esv3508003 | chr6:24618580-24732946 | Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| 4 | nsv601164 | chr6:24625091-24661599 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24621600-24631400 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr6:24623400-24631400 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
