Variant report

Variant	rs13209442
Chromosome Location	chr6:24597176-24597177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456309	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946707	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946723	0.85[CEU][hapmap]
rs11757448	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11759149	1.00[CEU][hapmap]
rs12195384	1.00[CEU][hapmap]
rs12209409	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12210323	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210684	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213116	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213672	1.00[CEU][hapmap]
rs13206235	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13208577	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212181	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17307430	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35374669	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24583800-24601200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:24584200-24600200	Weak transcription	A549	lung
4	chr6:24584400-24601200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:24586800-24601600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24588800-24601000	Weak transcription	Fetal Brain Female	brain
7	chr6:24588800-24601600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:24589000-24601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:24589000-24602200	Weak transcription	Hela-S3	cervix
10	chr6:24595400-24601000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:24596800-24601000	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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