Variant report

Variant	rs11759084
Chromosome Location	chr6:100729505-100729506
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100727871..100730715-chr6:100731405..100734347,3	K562	blood:
2	chr6:100717939..100720306-chr6:100729102..100731723,2	K562	blood:
3	chr6:100726523..100729993-chr6:100731372..100735998,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11752981	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13196553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13196561	0.91[EUR][1000 genomes]
rs13199764	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13203561	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13213230	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13217178	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34260097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35536355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6916312	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71539015	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100722000-100731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:100728800-100730000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:100729000-100729600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:100729000-100730200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:100729000-100730200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:100729200-100729600	Active TSS	Adipose Nuclei	Adipose
7	chr6:100729200-100729600	Active TSS	Brain Cingulate Gyrus	brain
8	chr6:100729200-100729600	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr6:100729200-100729600	Enhancers	Fetal Brain Male	brain
10	chr6:100729200-100729600	Flanking Active TSS	K562	blood
11	chr6:100729200-100729800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:100729200-100729800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:100729200-100729800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:100729200-100729800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:100729200-100729800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:100729200-100729800	Active TSS	Brain Angular Gyrus	brain
17	chr6:100729200-100729800	Active TSS	Brain Anterior Caudate	brain
18	chr6:100729200-100729800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:100729200-100729800	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:100729200-100729800	Flanking Active TSS	HSMM	muscle
21	chr6:100729200-100729800	Active TSS	HSMMtube	muscle
22	chr6:100729200-100729800	Flanking Active TSS	NHDF-Ad	bronchial
23	chr6:100729200-100730000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:100729200-100730000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:100729200-100730000	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:100729200-100730000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:100729200-100730000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:100729200-100730000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:100729200-100730000	Active TSS	Brain Germinal Matrix	brain
30	chr6:100729200-100730000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:100729200-100730200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:100729400-100729600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:100729400-100729600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:100729400-100729600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr6:100729400-100729600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:100729400-100729600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
37	chr6:100729400-100729600	Flanking Active TSS	Pancreas	Pancrea
38	chr6:100729400-100729600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr6:100729400-100729800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr6:100729400-100729800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:100729400-100729800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:100729400-100729800	Active TSS	H9 Cell Line	embryonic stem cell
43	chr6:100729400-100729800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:100729400-100729800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:100729400-100729800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:100729400-100729800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:100729400-100729800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:100729400-100729800	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr6:100729400-100729800	Bivalent Enhancer	Esophagus	oesophagus
50	chr6:100729400-100729800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

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