Variant report

Variant	rs13203561
Chromosome Location	chr6:100696741-100696742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11752981	0.89[EUR][1000 genomes]
rs11759084	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13196553	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13196561	0.84[EUR][1000 genomes]
rs13199764	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13213230	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13217178	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34260097	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35536355	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6915780	0.86[AFR][1000 genomes]
rs6916312	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71539015	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376816	0.86[AFR][1000 genomes]
rs9376817	0.86[AFR][1000 genomes]
rs9386068	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100695200-100705600	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links