Variant report

Variant	rs13196553
Chromosome Location	chr6:100725274-100725275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11752981	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11759084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13196561	0.91[EUR][1000 genomes]
rs13199764	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13203561	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13213230	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13217178	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34260097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35536355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916312	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71539015	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100718800-100729200	Weak transcription	NHLF	lung
2	chr6:100722000-100731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:100723000-100729400	Weak transcription	NHEK	skin
4	chr6:100723600-100729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:100723800-100725600	Enhancers	HUVEC	blood vessel
6	chr6:100724600-100725600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:100724600-100726000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:100724800-100725400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:100724800-100725400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:100724800-100725400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:100725200-100729400	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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