Variant report

Variant	rs11761241
Chromosome Location	chr7:96824491-96824492
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10447802	0.89[ASN][1000 genomes]
rs11761274	0.97[ASN][1000 genomes]
rs11761292	0.93[ASN][1000 genomes]
rs11763948	0.97[ASN][1000 genomes]
rs11765610	0.95[ASN][1000 genomes]
rs11773045	0.97[ASN][1000 genomes]
rs1554794	0.95[ASN][1000 genomes]
rs17417775	0.95[ASN][1000 genomes]
rs17417892	0.97[ASN][1000 genomes]
rs4382405	0.93[ASN][1000 genomes]
rs55962343	0.93[ASN][1000 genomes]
rs56211623	0.95[ASN][1000 genomes]
rs6465572	0.97[ASN][1000 genomes]
rs6960395	0.97[ASN][1000 genomes]
rs73233846	0.84[ASN][1000 genomes]
rs7778412	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96812400-96828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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