Variant report

Variant	rs1554794
Chromosome Location	chr7:96830170-96830171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10247445	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10262772	0.93[EUR][1000 genomes]
rs10273271	0.93[EUR][1000 genomes]
rs10447802	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10953206	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11761241	0.95[ASN][1000 genomes]
rs11761274	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761292	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11763948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11765610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767058	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11773045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113049	1.00[CEU][hapmap]
rs1358386	0.92[EUR][1000 genomes]
rs1527736	0.93[EUR][1000 genomes]
rs17417775	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2141229	0.95[EUR][1000 genomes]
rs2222726	0.91[EUR][1000 genomes]
rs4382405	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55962343	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56168496	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56211623	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465572	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6465573	0.94[EUR][1000 genomes]
rs6465574	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6465575	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6958340	0.93[EUR][1000 genomes]
rs6960395	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967782	1.00[CEU][hapmap]
rs73233846	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7778412	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785621	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7788665	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7795634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7807781	0.95[EUR][1000 genomes]
rs7807818	0.94[EUR][1000 genomes]
rs7808489	0.93[EUR][1000 genomes]
rs799609	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv981550	chr7:96830133-96830732	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96828800-96830400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:96828800-96830800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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