Variant report

Variant	rs56211623
Chromosome Location	chr7:96816611-96816612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96815072..96817361-chr7:96821955..96824089,2	K562	blood:
2	chr7:96815194..96818084-chr7:96819394..96821737,4	K562	blood:
3	chr7:96815488..96818084-chr7:96818414..96821704,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10247445	0.95[EUR][1000 genomes]
rs10262772	0.95[EUR][1000 genomes]
rs10273271	0.94[EUR][1000 genomes]
rs10447802	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10953206	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11761241	0.95[ASN][1000 genomes]
rs11761274	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761292	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11763948	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11765610	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767058	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11773045	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1358386	0.93[EUR][1000 genomes]
rs1527736	0.94[EUR][1000 genomes]
rs1554794	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417892	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2141229	0.95[EUR][1000 genomes]
rs2222726	0.92[EUR][1000 genomes]
rs4382405	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55962343	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56168496	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6465572	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6465573	0.95[EUR][1000 genomes]
rs6465574	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6465575	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6958340	0.94[EUR][1000 genomes]
rs6960395	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73233846	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7778412	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785621	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7788665	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7807781	0.95[EUR][1000 genomes]
rs7807818	0.95[EUR][1000 genomes]
rs7808489	0.93[EUR][1000 genomes]
rs799609	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96771400-96818200	Weak transcription	A549	lung
2	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:96803000-96818400	Weak transcription	Psoas Muscle	Psoas
6	chr7:96804000-96817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:96805400-96819000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:96809400-96817400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:96810000-96818000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:96812400-96817600	Weak transcription	Ovary	ovary
11	chr7:96812400-96818600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:96812400-96828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:96812600-96822200	Weak transcription	Liver	Liver
14	chr7:96812800-96823000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:96813000-96817800	Weak transcription	GM12878-XiMat	blood
16	chr7:96813200-96818600	Weak transcription	Primary T cells from cord blood	blood
17	chr7:96815600-96816800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr7:96816000-96816800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:96816000-96816800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr7:96816200-96816800	Enhancers	K562	blood
21	chr7:96816200-96817000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:96816200-96817000	Enhancers	NHDF-Ad	bronchial
23	chr7:96816600-96816800	Active TSS	Aorta	Aorta

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