Variant report

Variant	rs2222726
Chromosome Location	chr7:96822256-96822257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96815072..96817361-chr7:96821955..96824089,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10247445	0.88[EUR][1000 genomes]
rs10262772	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10273271	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10447802	0.90[EUR][1000 genomes]
rs10953206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11761274	0.92[EUR][1000 genomes]
rs11761292	0.90[EUR][1000 genomes]
rs11763948	0.91[EUR][1000 genomes]
rs11765610	0.91[EUR][1000 genomes]
rs11767058	0.87[EUR][1000 genomes]
rs11773045	0.92[EUR][1000 genomes]
rs1358386	0.92[EUR][1000 genomes]
rs1527736	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1554794	0.91[EUR][1000 genomes]
rs17417775	0.91[EUR][1000 genomes]
rs17417892	0.92[EUR][1000 genomes]
rs2141229	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4382405	0.89[EUR][1000 genomes]
rs55962343	0.90[EUR][1000 genomes]
rs56168496	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56211623	0.92[EUR][1000 genomes]
rs6465572	0.92[EUR][1000 genomes]
rs6465573	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6465574	0.87[EUR][1000 genomes]
rs6465575	0.87[EUR][1000 genomes]
rs6958340	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6960395	0.92[EUR][1000 genomes]
rs73233846	0.90[EUR][1000 genomes]
rs7778412	0.92[EUR][1000 genomes]
rs7785621	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7788665	0.87[EUR][1000 genomes]
rs7807781	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7807818	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7808489	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs799609	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96812400-96828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:96812800-96823000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:96822200-96822600	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links