Variant report

Variant	rs2141229
Chromosome Location	chr7:96827820-96827821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96748725..96750557-chr7:96827125..96829431,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10247445	0.92[EUR][1000 genomes]
rs10262772	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10273271	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10447802	0.94[EUR][1000 genomes]
rs10953206	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11761274	0.95[EUR][1000 genomes]
rs11761292	0.94[EUR][1000 genomes]
rs11763948	0.95[EUR][1000 genomes]
rs11765610	0.95[EUR][1000 genomes]
rs11767058	0.91[EUR][1000 genomes]
rs11773045	0.96[EUR][1000 genomes]
rs12113049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1358386	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1527736	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1554794	0.95[EUR][1000 genomes]
rs17417775	0.94[EUR][1000 genomes]
rs17417892	0.95[EUR][1000 genomes]
rs2222726	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4382405	0.93[EUR][1000 genomes]
rs55962343	0.94[EUR][1000 genomes]
rs56168496	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56211623	0.95[EUR][1000 genomes]
rs6465572	0.95[EUR][1000 genomes]
rs6465573	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465574	0.91[EUR][1000 genomes]
rs6465575	0.91[EUR][1000 genomes]
rs6958340	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6960395	0.95[EUR][1000 genomes]
rs6967782	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs73233846	0.94[EUR][1000 genomes]
rs7778412	0.95[EUR][1000 genomes]
rs7785621	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7788665	0.91[EUR][1000 genomes]
rs7795634	1.00[CEU][hapmap]
rs7807781	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807818	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808489	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs799609	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96812400-96828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:96827600-96828400	Flanking Active TSS	K562	blood

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