Variant report

Variant	rs4382405
Chromosome Location	chr7:96858099-96858100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96856230..96858940-chr7:96860716..96862284,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10247445	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10262772	0.91[EUR][1000 genomes]
rs10273271	0.95[EUR][1000 genomes]
rs10447802	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10953206	0.94[EUR][1000 genomes]
rs11761241	0.93[ASN][1000 genomes]
rs11761274	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11761292	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763948	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11765610	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11767058	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11773045	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12113049	1.00[CEU][hapmap]
rs1358386	0.94[EUR][1000 genomes]
rs1527736	0.95[EUR][1000 genomes]
rs1554794	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17417775	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17417892	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141229	0.93[EUR][1000 genomes]
rs2222726	0.89[EUR][1000 genomes]
rs55962343	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56168496	0.95[EUR][1000 genomes]
rs56211623	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6465572	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6465573	0.93[EUR][1000 genomes]
rs6465574	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6465575	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6958340	0.95[EUR][1000 genomes]
rs6960395	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6967782	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs73233846	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7778412	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7785621	0.95[EUR][1000 genomes]
rs7788665	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7795634	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7807781	0.93[EUR][1000 genomes]
rs7807818	0.93[EUR][1000 genomes]
rs7808489	0.91[EUR][1000 genomes]
rs799609	0.92[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4382405	ACN9	cis	parietal	SCAN
rs4382405	ZSCAN21	cis	cerebellum	SCAN
rs4382405	FBXO24	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96857800-96858400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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