Variant report

Variant	rs11765198
Chromosome Location	chr7:116578214-116578215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000227199	Chromatin interaction
ENSG00000222150	Chromatin interaction
ENSG00000214188	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11762032	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs11764134	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12706124	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12706125	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs12706126	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs12706127	0.91[EUR][1000 genomes]
rs12706134	1.00[CEU][hapmap]
rs12706135	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12706137	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs12706138	0.93[CEU][hapmap]
rs13235739	0.91[EUR][1000 genomes]
rs13239447	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs34042687	0.81[EUR][1000 genomes]
rs66758829	0.91[EUR][1000 genomes]
rs71544773	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv889074	chr7:116552859-116604194	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv889075	chr7:116552859-116610237	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv889073	chr7:116552859-116611113	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116570800-116592800	Weak transcription	Right Atrium	heart
2	chr7:116571000-116589000	Weak transcription	Fetal Lung	lung
3	chr7:116576400-116581000	Weak transcription	Fetal Heart	heart
4	chr7:116577200-116580600	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links