Variant report

Variant	rs12706138
Chromosome Location	chr7:116673902-116673903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116655560..116657072-chr7:116673244..116674855,2	K562	blood:
2	chr7:116672280..116675361-chr7:116676382..116679196,6	K562	blood:
3	chr7:116666668..116671169-chr7:116672583..116677847,7	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11762032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11764134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11765198	0.93[CEU][hapmap]
rs11773591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12706125	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12706126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12706127	1.00[AFR][1000 genomes]
rs12706134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12706135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12706136	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12706137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12706139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12706141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13222576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13222912	0.89[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13239447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13243111	0.87[AMR][1000 genomes]
rs13308921	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap]
rs66758829	1.00[AFR][1000 genomes]
rs71544773	1.00[AFR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116662000-116675200	Weak transcription	Fetal Stomach	stomach
2	chr7:116665800-116680600	Weak transcription	Osteobl	bone
3	chr7:116666200-116680400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:116667000-116674000	Weak transcription	HUVEC	blood vessel
5	chr7:116667000-116681000	Weak transcription	NH-A	brain
6	chr7:116667200-116676000	Weak transcription	K562	blood
7	chr7:116667200-116680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:116669400-116674400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:116671400-116674800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:116671600-116674600	Weak transcription	Fetal Lung	lung
11	chr7:116671600-116674800	Weak transcription	NHDF-Ad	bronchial
12	chr7:116671600-116675200	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:116671600-116676000	Weak transcription	Fetal Heart	heart
14	chr7:116671600-116676200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:116671600-116676200	Weak transcription	Brain Substantia Nigra	brain
16	chr7:116671600-116676200	Weak transcription	Fetal Brain Male	brain
17	chr7:116671600-116677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:116671600-116677000	Weak transcription	GM12878-XiMat	blood
19	chr7:116671600-116680200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:116672200-116676200	Weak transcription	Psoas Muscle	Psoas
21	chr7:116673000-116674000	Weak transcription	Brain Germinal Matrix	brain
22	chr7:116673600-116674000	Enhancers	Aorta	Aorta
23	chr7:116673800-116674000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:116673800-116674200	Enhancers	Pancreas	Pancrea
25	chr7:116673800-116674200	Enhancers	Right Atrium	heart

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